PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_28429

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

TCP

Protein Properties

Length: 303aa MW: 32070.6 Da PI: 6.7577

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_28429	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.7	4.8e-39	58	146	2	88
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg 88 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+ a++ ss s++s + PEQU_28429 58 APKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALaaAAAAAPSSISHPSTA 146 789******************************************************************77754333333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.9E-31	63	163	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.07	64	118	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008361	Biological Process	regulation of cell size
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0000987	Molecular Function	core promoter proximal region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MDSHGSSELQ HEHPKFLQNQ DKAETQRELQ MVISTSEREL PLVSSATEEK DDQKKQLAPK 60 RSSNKDRHTK VDGRGRRIRM PALCAARIFQ LTRELGHKSD GETIQWLLQQ AEPSIIAATG 120 SGTIPASALA AAAAAAPSSI SHPSTAAAGL HPMLNDPPPS TSAAASRPNW ATGLWPPAVP 180 VFGSHGFLPT NNLGGSSEGP AGGGFMQRIG LPGLELPGAN LGQMSFASLL SGHGQQIPGL 240 ELGLSQDGHI GVLNPHSLGQ FYLQMGQGRG GGNDEQQLQN QHHQHQQQSQ GSLNKDDSDG 300 STQ

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00636	PBM	Transfer from Glyma.19G095300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010927753.1	1e-100	PREDICTED: transcription factor TCP20-like
Swissprot	Q9LSD5	2e-69	TCP20_ARATH; Transcription factor TCP20
TrEMBL	M0S3K7	3e-87	M0S3K7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P27500_001	8e-87	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2864	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	8e-65	TCP family protein