PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_28429
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family TCP
Protein Properties Length: 303aa    MW: 32070.6 Da    PI: 6.7577
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_28429genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.74.8e-3958146288
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg 88 
                 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+    a++  ss s++s +
  PEQU_28429  58 APKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALaaAAAAAPSSISHPSTA 146
                 789******************************************************************77754333333333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-3163163IPR005333Transcription factor, TCP
PROSITE profilePS5136928.0764118IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDSHGSSELQ HEHPKFLQNQ DKAETQRELQ MVISTSEREL PLVSSATEEK DDQKKQLAPK  60
RSSNKDRHTK VDGRGRRIRM PALCAARIFQ LTRELGHKSD GETIQWLLQQ AEPSIIAATG  120
SGTIPASALA AAAAAAPSSI SHPSTAAAGL HPMLNDPPPS TSAAASRPNW ATGLWPPAVP  180
VFGSHGFLPT NNLGGSSEGP AGGGFMQRIG LPGLELPGAN LGQMSFASLL SGHGQQIPGL  240
ELGLSQDGHI GVLNPHSLGQ FYLQMGQGRG GGNDEQQLQN QHHQHQQQSQ GSLNKDDSDG  300
STQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00636PBMTransfer from Glyma.19G095300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010927753.11e-100PREDICTED: transcription factor TCP20-like
SwissprotQ9LSD52e-69TCP20_ARATH; Transcription factor TCP20
TrEMBLM0S3K73e-87M0S3K7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P27500_0018e-87(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28643269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.18e-65TCP family protein